Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL4A1P02462 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL4A1P02462 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A1P02462 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A1P02462 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 HLA-J-203ENST00000494367 1087 ntBASIC21.15■□□□□ 0.98
COL4A1P02462 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.15■□□□□ 0.98
COL4A1P02462 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.15■□□□□ 0.98
COL4A1P02462 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A1P02462 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A1P02462 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL4A1P02462 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A1P02462 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL4A1P02462 CCND1-203ENST00000536559 553 ntTSL 3 BASIC21.15■□□□□ 0.98
COL4A1P02462 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.15■□□□□ 0.98
COL4A1P02462 LINC01451-201ENST00000623792 534 ntBASIC21.15■□□□□ 0.98
COL4A1P02462 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
COL4A1P02462 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.14■□□□□ 0.98
COL4A1P02462 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC21.14■□□□□ 0.98
COL4A1P02462 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
COL4A1P02462 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A1P02462 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.97
COL4A1P02462 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A1P02462 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A1P02462 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A1P02462 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A1P02462 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A1P02462 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
COL4A1P02462 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A1P02462 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
COL4A1P02462 TIMM8BP1-201ENST00000452384 211 ntBASIC21.14■□□□□ 0.97
COL4A1P02462 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A1P02462 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.14■□□□□ 0.97
COL4A1P02462 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A1P02462 AC135050.7-201ENST00000624508 2218 ntBASIC21.14■□□□□ 0.97
COL4A1P02462 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A1P02462 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A1P02462 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
COL4A1P02462 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A1P02462 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A1P02462 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A1P02462 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.13■□□□□ 0.97
COL4A1P02462 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC21.13■□□□□ 0.97
COL4A1P02462 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A1P02462 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL4A1P02462 DUX4L17-201ENST00000557360 1267 ntBASIC21.13■□□□□ 0.97
COL4A1P02462 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL4A1P02462 AL121761.2-201ENST00000598007 1648 ntBASIC21.13■□□□□ 0.97
COL4A1P02462 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A1P02462 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A1P02462 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A1P02462 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A1P02462 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A1P02462 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL4A1P02462 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A1P02462 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.12■□□□□ 0.97
COL4A1P02462 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A1P02462 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A1P02462 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A1P02462 MIR770-201ENST00000390219 98 ntBASIC21.12■□□□□ 0.97
COL4A1P02462 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
COL4A1P02462 AL035633.1-201ENST00000406139 838 ntBASIC21.12■□□□□ 0.97
COL4A1P02462 FAM58DP-201ENST00000428076 619 ntBASIC21.12■□□□□ 0.97
COL4A1P02462 BCRP1-201ENST00000444246 691 ntBASIC21.12■□□□□ 0.97
COL4A1P02462 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.12■□□□□ 0.97
COL4A1P02462 AL135744.1-201ENST00000565098 629 ntBASIC21.12■□□□□ 0.97
COL4A1P02462 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.12■□□□□ 0.97
COL4A1P02462 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms