Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
ABCA1O95477 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.65□□□□□ -0.06
ABCA1O95477 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA1O95477 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA1O95477 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
ABCA1O95477 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
ABCA1O95477 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA1O95477 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA1O95477 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA1O95477 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA1O95477 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA1O95477 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA1O95477 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA1O95477 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
ABCA1O95477 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA1O95477 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 CRYGEP-201ENST00000412192 528 ntBASIC14.64□□□□□ -0.07
ABCA1O95477 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.64□□□□□ -0.07
ABCA1O95477 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCA1O95477 SPCS2P1-201ENST00000561636 679 ntBASIC14.64□□□□□ -0.07
ABCA1O95477 C20orf181-201ENST00000623918 480 ntBASIC14.64□□□□□ -0.07
ABCA1O95477 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
ABCA1O95477 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 AC010460.3-201ENST00000511359 1579 ntBASIC14.64□□□□□ -0.07
ABCA1O95477 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
ABCA1O95477 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCA1O95477 AL645939.2-201ENST00000427340 991 ntBASIC14.64□□□□□ -0.07
ABCA1O95477 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
ABCA1O95477 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA1O95477 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA1O95477 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA1O95477 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA1O95477 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCA1O95477 PGM5P2-202ENST00000637225 1043 ntBASIC14.64□□□□□ -0.07
ABCA1O95477 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
ABCA1O95477 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA1O95477 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
ABCA1O95477 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA1O95477 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCA1O95477 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
ABCA1O95477 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCA1O95477 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
ABCA1O95477 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCA1O95477 AC092364.2-202ENST00000597012 1073 ntBASIC14.63□□□□□ -0.07
ABCA1O95477 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCA1O95477 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCA1O95477 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 HCG11-201ENST00000411553 5696 ntBASIC14.63□□□□□ -0.07
ABCA1O95477 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.63□□□□□ -0.07
ABCA1O95477 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCA1O95477 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.63□□□□□ -0.07
ABCA1O95477 VN2R19P-201ENST00000442399 1052 ntBASIC14.63□□□□□ -0.07
ABCA1O95477 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
ABCA1O95477 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 MIR3197-201ENST00000582241 73 ntBASIC14.63□□□□□ -0.07
ABCA1O95477 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCA1O95477 AC027612.4-201ENST00000605371 583 ntBASIC14.63□□□□□ -0.07
ABCA1O95477 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCA1O95477 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA1O95477 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCA1O95477 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms