Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 NUS1P2-201ENST00000417358 873 ntBASIC20.2■□□□□ 0.82
CTDNEP1O95476 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 AC138894.3-201ENST00000603787 634 ntBASIC20.19■□□□□ 0.82
CTDNEP1O95476 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.19■□□□□ 0.82
CTDNEP1O95476 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTDNEP1O95476 AGGF1P2-201ENST00000426656 2106 ntBASIC20.18■□□□□ 0.82
CTDNEP1O95476 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 SPDYE21P-201ENST00000413323 827 ntBASIC20.18■□□□□ 0.82
CTDNEP1O95476 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 ABCD1P5-201ENST00000445663 754 ntBASIC20.18■□□□□ 0.82
CTDNEP1O95476 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 AP001269.4-201ENST00000609611 512 ntBASIC20.18■□□□□ 0.82
CTDNEP1O95476 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.18■□□□□ 0.82
CTDNEP1O95476 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTDNEP1O95476 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.17■□□□□ 0.82
CTDNEP1O95476 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTDNEP1O95476 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTDNEP1O95476 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTDNEP1O95476 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTDNEP1O95476 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTDNEP1O95476 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CTDNEP1O95476 AC004817.3-201ENST00000602957 2129 ntBASIC20.17■□□□□ 0.82
CTDNEP1O95476 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTDNEP1O95476 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTDNEP1O95476 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CTDNEP1O95476 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms