Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SEMA3DO95025 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 AC091607.1-201ENST00000490318 1060 ntBASIC16.76■□□□□ 0.27
SEMA3DO95025 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.76■□□□□ 0.27
SEMA3DO95025 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.76■□□□□ 0.27
SEMA3DO95025 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.76■□□□□ 0.27
SEMA3DO95025 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SEMA3DO95025 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 AC011467.2-201ENST00000598425 242 ntBASIC16.76■□□□□ 0.27
SEMA3DO95025 AC069148.1-201ENST00000608741 768 ntBASIC16.76■□□□□ 0.27
SEMA3DO95025 AL358472.4-201ENST00000633140 710 ntBASIC16.76■□□□□ 0.27
SEMA3DO95025 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 CROCCP2-202ENST00000412962 2773 ntBASIC16.76■□□□□ 0.27
SEMA3DO95025 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.76■□□□□ 0.27
SEMA3DO95025 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.76■□□□□ 0.27
SEMA3DO95025 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SEMA3DO95025 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SEMA3DO95025 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
SEMA3DO95025 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
SEMA3DO95025 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 TOB2P1-201ENST00000469761 992 ntBASIC16.75■□□□□ 0.27
SEMA3DO95025 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.75■□□□□ 0.27
SEMA3DO95025 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.75■□□□□ 0.27
SEMA3DO95025 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 AL445228.2-201ENST00000605589 952 ntBASIC16.75■□□□□ 0.27
SEMA3DO95025 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SEMA3DO95025 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SEMA3DO95025 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.75■□□□□ 0.27
SEMA3DO95025 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SEMA3DO95025 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
SEMA3DO95025 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.74■□□□□ 0.27
SEMA3DO95025 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.74■□□□□ 0.27
SEMA3DO95025 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.74■□□□□ 0.27
SEMA3DO95025 AC111152.3-201ENST00000569699 673 ntBASIC16.74■□□□□ 0.27
SEMA3DO95025 AC109462.3-201ENST00000573934 613 ntBASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms