Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.5■□□□□ 0.39
SHOX2O60902 KRT8P7-201ENST00000533003 1432 ntBASIC17.5■□□□□ 0.39
SHOX2O60902 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.5■□□□□ 0.39
SHOX2O60902 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.5■□□□□ 0.39
SHOX2O60902 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.5■□□□□ 0.39
SHOX2O60902 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.5■□□□□ 0.39
SHOX2O60902 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SHOX2O60902 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
SHOX2O60902 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.5■□□□□ 0.39
SHOX2O60902 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SHOX2O60902 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 ALOX12P2-203ENST00000570921 1945 ntBASIC17.49■□□□□ 0.39
SHOX2O60902 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.49■□□□□ 0.39
SHOX2O60902 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 AL139327.4-201ENST00000612362 153 ntBASIC17.49■□□□□ 0.39
SHOX2O60902 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.49■□□□□ 0.39
SHOX2O60902 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 AC006538.1-201ENST00000567905 1585 ntBASIC17.49■□□□□ 0.39
SHOX2O60902 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.49■□□□□ 0.39
SHOX2O60902 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHOX2O60902 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.48■□□□□ 0.39
SHOX2O60902 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.48■□□□□ 0.39
SHOX2O60902 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.48■□□□□ 0.39
SHOX2O60902 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 AC008040.2-201ENST00000461049 708 ntBASIC17.48■□□□□ 0.39
SHOX2O60902 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.48■□□□□ 0.39
SHOX2O60902 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 AC008403.3-201ENST00000598924 454 ntBASIC17.48■□□□□ 0.39
SHOX2O60902 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
SHOX2O60902 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.48■□□□□ 0.39
SHOX2O60902 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHOX2O60902 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.47■□□□□ 0.39
SHOX2O60902 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.47■□□□□ 0.39
SHOX2O60902 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms