Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 AC140113.3-201ENST00000605663 199 ntBASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 TMEM191A-211ENST00000637163 1067 ntBASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 SPDYE15P-201ENST00000424157 909 ntBASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 MTCL1P1-201ENST00000446207 792 ntBASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 AC092053.1-201ENST00000605787 1936 ntBASIC17.52■□□□□ 0.4
TRIM49D1C9J1S8 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM49D1C9J1S8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM49D1C9J1S8 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM49D1C9J1S8 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.39
TRIM49D1C9J1S8 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM49D1C9J1S8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM49D1C9J1S8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 IGHGP-201ENST00000390555 1178 ntBASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms