Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ZNF767P-206ENST00000513792 565 ntBASIC13.39□□□□□ -0.27
COL6A5A8TX70 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 AC007967.4-201ENST00000614700 386 ntBASIC13.39□□□□□ -0.27
COL6A5A8TX70 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 GNAQP1-201ENST00000444815 1067 ntBASIC13.38□□□□□ -0.27
COL6A5A8TX70 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 AL009183.1-201ENST00000603760 355 ntBASIC13.38□□□□□ -0.27
COL6A5A8TX70 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 PDIA3P1-201ENST00000471856 1510 ntBASIC13.38□□□□□ -0.27
COL6A5A8TX70 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 AC104989.1-201ENST00000519711 778 ntBASIC13.38□□□□□ -0.27
COL6A5A8TX70 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A5A8TX70 MIR6775-201ENST00000617557 69 ntBASIC13.38□□□□□ -0.27
COL6A5A8TX70 SPDYE12P-201ENST00000618416 771 ntBASIC13.38□□□□□ -0.27
COL6A5A8TX70 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.38□□□□□ -0.27
COL6A5A8TX70 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 RPS15-212ENST00000593052 629 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AL590787.1-201ENST00000568856 1315 ntBASIC13.37□□□□□ -0.27
COL6A5A8TX70 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 AC109462.3-201ENST00000573934 613 ntBASIC13.37□□□□□ -0.27
COL6A5A8TX70 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 ADM-207ENST00000530439 1839 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A5A8TX70 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
COL6A5A8TX70 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 AC107918.2-201ENST00000530817 355 ntBASIC13.36□□□□□ -0.27
COL6A5A8TX70 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms