Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 MYCLP1-201ENST00000372451 1075 ntBASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 AC015911.4-201ENST00000588022 1070 ntBASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA1Q9Y5H4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 AC002558.1-201ENST00000488906 803 ntBASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 AC022145.2-201ENST00000598203 171 ntBASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
PCDHGA1Q9Y5H4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 PI4KAP1-204ENST00000612579 1703 ntBASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM86GP-201ENST00000448322 971 ntBASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 AC067863.1-201ENST00000494933 530 ntBASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 AC112191.1-201ENST00000523689 701 ntBASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHGA1Q9Y5H4 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms