Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 AC134043.2-201ENST00000624206 2238 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 GNAS-203ENST00000306120 1878 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 ACTG1P4-201ENST00000425123 1122 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 RPL13AP23-201ENST00000480739 586 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 AC136632.2-201ENST00000512891 861 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 SLC25A1P1-201ENST00000528351 927 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 AL353135.1-201ENST00000606729 504 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 NOC2LP2-201ENST00000407594 1944 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 AL135999.2-201ENST00000622438 1686 ntBASIC18.46■□□□□ 0.55
CDH9Q9ULB4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 AF228730.7-201ENST00000641842 219 ntBASIC18.45■□□□□ 0.54
CDH9Q9ULB4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 AC007613.1-201ENST00000572811 2597 ntBASIC18.45■□□□□ 0.54
CDH9Q9ULB4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CDH9Q9ULB4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 AC006504.4-201ENST00000592118 1568 ntBASIC18.44■□□□□ 0.54
CDH9Q9ULB4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 ELK2BP-201ENST00000415014 1224 ntBASIC18.44■□□□□ 0.54
CDH9Q9ULB4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 AC145285.3-201ENST00000564603 959 ntBASIC18.44■□□□□ 0.54
CDH9Q9ULB4 AC106730.1-201ENST00000566722 1090 ntBASIC18.44■□□□□ 0.54
CDH9Q9ULB4 AC117500.6-201ENST00000624871 588 ntBASIC18.44■□□□□ 0.54
CDH9Q9ULB4 AC005593.1-201ENST00000624894 515 ntBASIC18.44■□□□□ 0.54
CDH9Q9ULB4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CDH9Q9ULB4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms