Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 AL020989.1-201ENST00000422979 469 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 AL450487.1-201ENST00000426799 995 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 SAPCD2P3-201ENST00000455031 850 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 AF238378.1-201ENST00000526806 358 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 AL355877.3-201ENST00000622820 899 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 AC073592.4-201ENST00000623827 446 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 SIGLEC16-201ENST00000599858 1437 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 AL645608.8-201ENST00000606034 2086 ntBASIC18.64■□□□□ 0.57
CISHQ9NSE2 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.64■□□□□ 0.57
CISHQ9NSE2 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CISHQ9NSE2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 KRT126P-201ENST00000549467 1181 ntBASIC18.63■□□□□ 0.57
CISHQ9NSE2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 AC008608.2-201ENST00000606089 416 ntBASIC18.63■□□□□ 0.57
CISHQ9NSE2 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CISHQ9NSE2 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CISHQ9NSE2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 FGFR3P6-201ENST00000457012 610 ntBASIC18.62■□□□□ 0.57
CISHQ9NSE2 EMBP1-201ENST00000458200 901 ntBASIC18.62■□□□□ 0.57
CISHQ9NSE2 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 AC016396.2-201ENST00000562575 1417 ntBASIC18.62■□□□□ 0.57
CISHQ9NSE2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 AC004817.3-201ENST00000602957 2129 ntBASIC18.62■□□□□ 0.57
CISHQ9NSE2 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CISHQ9NSE2 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
CISHQ9NSE2 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CISHQ9NSE2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CISHQ9NSE2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CISHQ9NSE2 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CISHQ9NSE2 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.61■□□□□ 0.57
CISHQ9NSE2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.61■□□□□ 0.57
CISHQ9NSE2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms