Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.09■□□□□ 0.49
HPS4Q9NQG7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 MIR3687-2-201ENST00000577708 61 ntBASIC18.09■□□□□ 0.49
HPS4Q9NQG7 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 AP001160.2-201ENST00000596071 487 ntBASIC18.09■□□□□ 0.49
HPS4Q9NQG7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 MIR3687-1-201ENST00000614492 61 ntBASIC18.09■□□□□ 0.49
HPS4Q9NQG7 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 PCDHB18P-201ENST00000524813 2368 ntBASIC18.09■□□□□ 0.49
HPS4Q9NQG7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HPS4Q9NQG7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.08■□□□□ 0.49
HPS4Q9NQG7 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 AC100803.2-201ENST00000562459 1963 ntBASIC18.08■□□□□ 0.49
HPS4Q9NQG7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS4Q9NQG7 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 RPS8P6-201ENST00000426177 609 ntBASIC18.08■□□□□ 0.48
HPS4Q9NQG7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS4Q9NQG7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 AC090164.3-201ENST00000610780 2143 ntBASIC18.07■□□□□ 0.48
HPS4Q9NQG7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 KLF4P1-201ENST00000412782 1185 ntBASIC18.07■□□□□ 0.48
HPS4Q9NQG7 AC004967.1-201ENST00000453589 447 ntBASIC18.07■□□□□ 0.48
HPS4Q9NQG7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HPS4Q9NQG7 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HPS4Q9NQG7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms