Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 TUBB1P2-201ENST00000422712 1306 ntBASIC16.06■□□□□ 0.16
CHD8Q9HCK8 TUBB1P1-201ENST00000503144 1300 ntBASIC16.06■□□□□ 0.16
CHD8Q9HCK8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 LINC00982-205ENST00000420957 435 ntBASIC16.06■□□□□ 0.16
CHD8Q9HCK8 ACTG1P4-201ENST00000425123 1122 ntBASIC16.06■□□□□ 0.16
CHD8Q9HCK8 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 AC011495.1-201ENST00000498085 584 ntBASIC16.06■□□□□ 0.16
CHD8Q9HCK8 AC107918.2-201ENST00000530817 355 ntBASIC16.06■□□□□ 0.16
CHD8Q9HCK8 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHD8Q9HCK8 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 RN7SL219P-201ENST00000582872 296 ntBASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC243960.2-201ENST00000600996 747 ntBASIC16.05■□□□□ 0.16
CHD8Q9HCK8 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC104989.1-201ENST00000519711 778 ntBASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 WASH4P-201ENST00000564273 1246 ntBASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC007967.4-201ENST00000614700 386 ntBASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AL161645.1-201ENST00000622716 1255 ntBASIC16.05■□□□□ 0.16
CHD8Q9HCK8 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHD8Q9HCK8 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 MIR663B-201ENST00000408361 115 ntBASIC16.04■□□□□ 0.16
CHD8Q9HCK8 AC093004.1-201ENST00000508850 424 ntBASIC16.04■□□□□ 0.16
CHD8Q9HCK8 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 AC087163.2-201ENST00000457299 853 ntBASIC16.04■□□□□ 0.16
CHD8Q9HCK8 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 IGHV3-62-201ENST00000520057 340 ntBASIC16.04■□□□□ 0.16
CHD8Q9HCK8 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 AL009183.1-201ENST00000603760 355 ntBASIC16.04■□□□□ 0.16
CHD8Q9HCK8 AL021578.1-201ENST00000613646 709 ntBASIC16.04■□□□□ 0.16
CHD8Q9HCK8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.04■□□□□ 0.16
CHD8Q9HCK8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.03■□□□□ 0.16
CHD8Q9HCK8 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms