Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.07■□□□□ 0.48
CDX2Q99626 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CDX2Q99626 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.07■□□□□ 0.48
CDX2Q99626 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.07■□□□□ 0.48
CDX2Q99626 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.07■□□□□ 0.48
CDX2Q99626 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.07■□□□□ 0.48
CDX2Q99626 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.07■□□□□ 0.48
CDX2Q99626 WASH4P-201ENST00000564273 1246 ntBASIC18.07■□□□□ 0.48
CDX2Q99626 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.07■□□□□ 0.48
CDX2Q99626 AC093010.1-201ENST00000473625 1624 ntBASIC18.07■□□□□ 0.48
CDX2Q99626 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.07■□□□□ 0.48
CDX2Q99626 AL161938.1-201ENST00000569833 2180 ntBASIC18.07■□□□□ 0.48
CDX2Q99626 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.06■□□□□ 0.48
CDX2Q99626 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.06■□□□□ 0.48
CDX2Q99626 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
CDX2Q99626 TTTY23B-201ENST00000442790 549 ntBASIC18.06■□□□□ 0.48
CDX2Q99626 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.06■□□□□ 0.48
CDX2Q99626 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.06■□□□□ 0.48
CDX2Q99626 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.06■□□□□ 0.48
CDX2Q99626 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.06■□□□□ 0.48
CDX2Q99626 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 CHCHD2P3-201ENST00000603038 451 ntBASIC18.06■□□□□ 0.48
CDX2Q99626 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
CDX2Q99626 MIR6775-201ENST00000617557 69 ntBASIC18.06■□□□□ 0.48
CDX2Q99626 AC004840.1-201ENST00000636359 365 ntBASIC18.06■□□□□ 0.48
CDX2Q99626 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.06■□□□□ 0.48
CDX2Q99626 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 AL049812.1-201ENST00000432563 2267 ntBASIC18.06■□□□□ 0.48
CDX2Q99626 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX2Q99626 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.05■□□□□ 0.48
CDX2Q99626 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.05■□□□□ 0.48
CDX2Q99626 AC234783.1-201ENST00000441761 496 ntBASIC18.05■□□□□ 0.48
CDX2Q99626 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.05■□□□□ 0.48
CDX2Q99626 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CDX2Q99626 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.05■□□□□ 0.48
CDX2Q99626 RN7SL219P-201ENST00000582872 296 ntBASIC18.05■□□□□ 0.48
CDX2Q99626 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.05■□□□□ 0.48
CDX2Q99626 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.05■□□□□ 0.48
CDX2Q99626 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 MIR6869-201ENST00000619434 62 ntBASIC18.05■□□□□ 0.48
CDX2Q99626 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CDX2Q99626 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.05■□□□□ 0.48
CDX2Q99626 AL109936.8-201ENST00000641772 604 ntBASIC18.05■□□□□ 0.48
CDX2Q99626 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX2Q99626 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.05■□□□□ 0.48
CDX2Q99626 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.05■□□□□ 0.48
CDX2Q99626 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.05■□□□□ 0.48
CDX2Q99626 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.05■□□□□ 0.48
CDX2Q99626 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 AC087499.5-201ENST00000452760 1342 ntBASIC18.04■□□□□ 0.48
CDX2Q99626 BX276092.7-203ENST00000637198 1536 ntBASIC18.04■□□□□ 0.48
CDX2Q99626 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CDX2Q99626 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.04■□□□□ 0.48
CDX2Q99626 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.04■□□□□ 0.48
CDX2Q99626 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 RN7SL837P-201ENST00000463010 287 ntBASIC18.04■□□□□ 0.48
CDX2Q99626 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 AC109635.5-201ENST00000533593 962 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms