Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20■□□□□ 0.79
USP28Q96RU2 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20■□□□□ 0.79
USP28Q96RU2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.99■□□□□ 0.79
USP28Q96RU2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.99■□□□□ 0.79
USP28Q96RU2 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 LINC01238-205ENST00000567549 1107 ntBASIC19.99■□□□□ 0.79
USP28Q96RU2 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.99■□□□□ 0.79
USP28Q96RU2 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.99■□□□□ 0.79
USP28Q96RU2 AC090616.6-201ENST00000582640 721 ntBASIC19.99■□□□□ 0.79
USP28Q96RU2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.99■□□□□ 0.79
USP28Q96RU2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.99■□□□□ 0.79
USP28Q96RU2 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
USP28Q96RU2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.99■□□□□ 0.79
USP28Q96RU2 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
USP28Q96RU2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP28Q96RU2 AC005915.1-201ENST00000624912 2018 ntBASIC19.98■□□□□ 0.79
USP28Q96RU2 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP28Q96RU2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.98■□□□□ 0.79
USP28Q96RU2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.98■□□□□ 0.79
USP28Q96RU2 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.98■□□□□ 0.79
USP28Q96RU2 AL031133.1-201ENST00000406807 723 ntBASIC19.98■□□□□ 0.79
USP28Q96RU2 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.98■□□□□ 0.79
USP28Q96RU2 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.98■□□□□ 0.79
USP28Q96RU2 AC122714.2-201ENST00000502787 707 ntBASIC19.98■□□□□ 0.79
USP28Q96RU2 KRT8P26-201ENST00000534154 1276 ntBASIC19.98■□□□□ 0.79
USP28Q96RU2 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
USP28Q96RU2 KRT8P10-201ENST00000450021 1447 ntBASIC19.98■□□□□ 0.79
USP28Q96RU2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
USP28Q96RU2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.98■□□□□ 0.79
USP28Q96RU2 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.98■□□□□ 0.79
USP28Q96RU2 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP28Q96RU2 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.98■□□□□ 0.79
USP28Q96RU2 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
USP28Q96RU2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP28Q96RU2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 AC105020.1-201ENST00000435356 2205 ntBASIC19.97■□□□□ 0.79
USP28Q96RU2 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 MYCLP1-201ENST00000372451 1075 ntBASIC19.97■□□□□ 0.79
USP28Q96RU2 IGHV3-52-201ENST00000519770 353 ntBASIC19.97■□□□□ 0.79
USP28Q96RU2 AP005901.3-202ENST00000581653 237 ntBASIC19.97■□□□□ 0.79
USP28Q96RU2 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.97■□□□□ 0.79
USP28Q96RU2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.97■□□□□ 0.79
USP28Q96RU2 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.97■□□□□ 0.79
USP28Q96RU2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP28Q96RU2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms