Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 AC119751.2-201ENST00000504529 210 ntBASIC17.12■□□□□ 0.33
VPS13AQ96RL7 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 AC092552.1-201ENST00000547243 906 ntBASIC17.12■□□□□ 0.33
VPS13AQ96RL7 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AC104581.1-202ENST00000635932 2618 ntBASIC17.11■□□□□ 0.33
VPS13AQ96RL7 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AC026150.2-201ENST00000564693 1156 ntBASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AC106886.1-201ENST00000568660 600 ntBASIC17.11■□□□□ 0.33
VPS13AQ96RL7 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AL096828.2-201ENST00000567259 1965 ntBASIC17.11■□□□□ 0.33
VPS13AQ96RL7 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 HCG4-201ENST00000418983 998 ntBASIC17.11■□□□□ 0.33
VPS13AQ96RL7 KRT8P23-201ENST00000560090 1207 ntBASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AC009407.1-201ENST00000568958 598 ntBASIC17.11■□□□□ 0.33
VPS13AQ96RL7 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS13AQ96RL7 COX5BP2-201ENST00000392354 334 ntBASIC17.1■□□□□ 0.33
VPS13AQ96RL7 SPCS2P4-201ENST00000436160 681 ntBASIC17.1■□□□□ 0.33
VPS13AQ96RL7 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS13AQ96RL7 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 AC116562.4-201ENST00000641316 2276 ntBASIC17.09■□□□□ 0.33
VPS13AQ96RL7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 TMEM14DP-201ENST00000422205 345 ntBASIC17.09■□□□□ 0.33
VPS13AQ96RL7 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS13AQ96RL7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms