Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHFRQ96EP1 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 KRT18P55-202ENST00000578578 1546 ntBASIC17.72■□□□□ 0.43
CHFRQ96EP1 REXO1L11P-201ENST00000620964 1927 ntBASIC17.72■□□□□ 0.43
CHFRQ96EP1 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 ACTG1P4-201ENST00000425123 1122 ntBASIC17.72■□□□□ 0.43
CHFRQ96EP1 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 AC091812.2-201ENST00000619081 385 ntBASIC17.72■□□□□ 0.43
CHFRQ96EP1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHFRQ96EP1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.72■□□□□ 0.43
CHFRQ96EP1 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 AL139400.1-201ENST00000366220 510 ntBASIC17.71■□□□□ 0.43
CHFRQ96EP1 MYCLP1-201ENST00000372451 1075 ntBASIC17.71■□□□□ 0.43
CHFRQ96EP1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 FAM58CP-201ENST00000435741 640 ntBASIC17.71■□□□□ 0.43
CHFRQ96EP1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 AC074386.1-202ENST00000463561 864 ntBASIC17.71■□□□□ 0.43
CHFRQ96EP1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 AP002472.1-201ENST00000577490 586 ntBASIC17.71■□□□□ 0.43
CHFRQ96EP1 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 AC092902.6-201ENST00000641783 218 ntBASIC17.71■□□□□ 0.43
CHFRQ96EP1 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHFRQ96EP1 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.71■□□□□ 0.43
CHFRQ96EP1 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.71■□□□□ 0.42
CHFRQ96EP1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CHFRQ96EP1 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms