Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
NKX2-3Q8TAU0 AC141586.5-201ENST00000624546 2050 ntBASIC20.65■□□□□ 0.9
NKX2-3Q8TAU0 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.65■□□□□ 0.9
NKX2-3Q8TAU0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NKX2-3Q8TAU0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.64■□□□□ 0.9
NKX2-3Q8TAU0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.64■□□□□ 0.9
NKX2-3Q8TAU0 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.64■□□□□ 0.9
NKX2-3Q8TAU0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NKX2-3Q8TAU0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 SLC25A1P3-201ENST00000395415 828 ntBASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 AC092910.1-201ENST00000482027 1129 ntBASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 AC012640.2-201ENST00000561606 901 ntBASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX2-3Q8TAU0 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 MTDHP5-201ENST00000598980 586 ntBASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 LINC01451-201ENST00000623792 534 ntBASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NKX2-3Q8TAU0 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AC211486.1-202ENST00000416371 468 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AP006288.1-201ENST00000446065 395 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AC211476.1-201ENST00000503899 468 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 RNA5SP415-201ENST00000517246 115 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AC092364.2-202ENST00000597012 1073 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AL139327.4-201ENST00000612362 153 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AL356309.3-201ENST00000624132 1934 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms