Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AL590627.1-203ENST00000421194 1026 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 CYB561-217ENST00000582997 877 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 LINC01126-201ENST00000623515 1646 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 FAM197Y8-203ENST00000450145 560 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MINOS1P3-201ENST00000457048 203 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MTDHP3-201ENST00000594186 672 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AL773604.1-201ENST00000617417 272 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AC008608.2-201ENST00000606089 416 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 VENTXP7-201ENST00000475503 772 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AC009533.2-201ENST00000543664 586 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 GZMM-202ENST00000592501 941 ntTSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 COBL-210ENST00000632460 1941 ntTSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms