Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 BX664615.1-201ENST00000443558 458 ntBASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 HMGA1P5-201ENST00000412453 271 ntBASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 DUTP2-201ENST00000519164 463 ntBASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ZNF540Q8NDQ6 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 GPAT2P1-201ENST00000444924 1672 ntBASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 MFAP1P1-201ENST00000442257 1255 ntBASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 ECEL1P2-202ENST00000465689 757 ntBASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 AC010653.2-201ENST00000623505 997 ntBASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ZNF540Q8NDQ6 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 AL391005.1-201ENST00000623953 2435 ntBASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 TSPY17P-201ENST00000450329 467 ntBASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms