Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 AL512625.2-201ENST00000417533 625 ntBASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 APTR-203ENST00000430801 583 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 AC026185.1-201ENST00000445748 174 ntBASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 C2orf69P4-201ENST00000565394 541 ntBASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 CYP2T3P-201ENST00000601990 817 ntBASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28AQ8IWP9 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 AC026748.1-201ENST00000624349 3251 ntBASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 LSM12P1-201ENST00000411836 588 ntBASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28AQ8IWP9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms