Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 AC233702.3-201ENST00000578656 1387 ntBASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 AC016396.2-201ENST00000562575 1417 ntBASIC17.38■□□□□ 0.37
ZNF549Q6P9A3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 MIR3180-1-201ENST00000580374 94 ntBASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 MIR3180-3-201ENST00000584616 94 ntBASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 AP002414.4-201ENST00000589764 1148 ntBASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 AL358472.4-201ENST00000633140 710 ntBASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF549Q6P9A3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 FAM220CP-201ENST00000395253 831 ntBASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SLC25A1P3-201ENST00000395415 828 ntBASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 DRAXINP1-201ENST00000437611 948 ntBASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 AL445228.2-201ENST00000605589 952 ntBASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 AP000550.4-202ENST00000639755 178 ntBASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 KRT8P10-201ENST00000450021 1447 ntBASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 AC116353.5-201ENST00000638148 1699 ntBASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF549Q6P9A3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF549Q6P9A3 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms