Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 BX664615.1-201ENST00000443558 458 ntBASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.82■□□□□ 0.28
PPP4R4Q6NUP7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 COX11P1-201ENST00000489116 835 ntBASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 CR769767.2-201ENST00000622735 460 ntBASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PPP4R4Q6NUP7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 MIR3180-5-201ENST00000583743 153 ntBASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms