Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 AL591424.1-201ENST00000442569 1213 ntBASIC21.07■□□□□ 0.96
RFX7Q2KHR2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 AC092865.5-201ENST00000545435 363 ntBASIC21.07■□□□□ 0.96
RFX7Q2KHR2 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RFX7Q2KHR2 AC005332.8-201ENST00000622750 2735 ntBASIC21.06■□□□□ 0.96
RFX7Q2KHR2 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 ELK2BP-201ENST00000415014 1224 ntBASIC21.06■□□□□ 0.96
RFX7Q2KHR2 AL020989.1-201ENST00000422979 469 ntBASIC21.06■□□□□ 0.96
RFX7Q2KHR2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 AC004817.3-201ENST00000602957 2129 ntBASIC21.06■□□□□ 0.96
RFX7Q2KHR2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX7Q2KHR2 AL023806.1-201ENST00000603994 1649 ntBASIC21.06■□□□□ 0.96
RFX7Q2KHR2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 AL645608.8-201ENST00000606034 2086 ntBASIC21.05■□□□□ 0.96
RFX7Q2KHR2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX7Q2KHR2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX7Q2KHR2 MIR1233-2-201ENST00000408138 82 ntBASIC21.04■□□□□ 0.96
RFX7Q2KHR2 MIR1233-1-201ENST00000408722 82 ntBASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms