Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH11P55287 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH11P55287 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CDH11P55287 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH11P55287 HBZP1-201ENST00000354915 429 ntBASIC16.07■□□□□ 0.16
CDH11P55287 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH11P55287 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 AL645929.1-201ENST00000420084 975 ntBASIC16.07■□□□□ 0.16
CDH11P55287 AC092597.1-201ENST00000487352 616 ntBASIC16.07■□□□□ 0.16
CDH11P55287 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.07■□□□□ 0.16
CDH11P55287 KRT18P56-201ENST00000507275 550 ntBASIC16.07■□□□□ 0.16
CDH11P55287 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.07■□□□□ 0.16
CDH11P55287 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.07■□□□□ 0.16
CDH11P55287 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.07■□□□□ 0.16
CDH11P55287 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH11P55287 AC116407.2-201ENST00000613639 860 ntBASIC16.07■□□□□ 0.16
CDH11P55287 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH11P55287 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH11P55287 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH11P55287 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.06■□□□□ 0.16
CDH11P55287 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.06■□□□□ 0.16
CDH11P55287 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH11P55287 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH11P55287 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CDH11P55287 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH11P55287 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 HCG4P8-203ENST00000443049 980 ntBASIC16.06■□□□□ 0.16
CDH11P55287 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.06■□□□□ 0.16
CDH11P55287 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH11P55287 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.06■□□□□ 0.16
CDH11P55287 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.06■□□□□ 0.16
CDH11P55287 AC008687.5-201ENST00000593746 558 ntBASIC16.06■□□□□ 0.16
CDH11P55287 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.06■□□□□ 0.16
CDH11P55287 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.06■□□□□ 0.16
CDH11P55287 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDH11P55287 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
CDH11P55287 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH11P55287 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CDH11P55287 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CDH11P55287 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH11P55287 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CDH11P55287 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.05■□□□□ 0.16
CDH11P55287 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH11P55287 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.05■□□□□ 0.16
CDH11P55287 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH11P55287 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.05■□□□□ 0.16
CDH11P55287 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.05■□□□□ 0.16
CDH11P55287 AL157888.1-201ENST00000631930 593 ntBASIC16.05■□□□□ 0.16
CDH11P55287 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH11P55287 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CDH11P55287 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH11P55287 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.05■□□□□ 0.16
CDH11P55287 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CDH11P55287 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH11P55287 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 NFIC-211ENST00000641145 8399 ntBASIC16.04■□□□□ 0.16
CDH11P55287 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.04■□□□□ 0.16
CDH11P55287 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.04■□□□□ 0.16
CDH11P55287 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 AL118508.1-201ENST00000613502 2345 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms