Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
SHMT2P34897 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SHMT2P34897 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
SHMT2P34897 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.16■□□□□ 0.34
SHMT2P34897 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.16■□□□□ 0.34
SHMT2P34897 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.16■□□□□ 0.34
SHMT2P34897 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.16■□□□□ 0.34
SHMT2P34897 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.16■□□□□ 0.34
SHMT2P34897 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.16■□□□□ 0.34
SHMT2P34897 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.16■□□□□ 0.34
SHMT2P34897 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SHMT2P34897 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
SHMT2P34897 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SHMT2P34897 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
SHMT2P34897 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.16■□□□□ 0.34
SHMT2P34897 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SHMT2P34897 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHMT2P34897 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
SHMT2P34897 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SHMT2P34897 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 AC004870.1-201ENST00000315132 882 ntBASIC17.15■□□□□ 0.34
SHMT2P34897 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 AC103564.2-201ENST00000432853 1299 ntBASIC17.15■□□□□ 0.34
SHMT2P34897 UNC93B7-201ENST00000509439 705 ntBASIC17.15■□□□□ 0.34
SHMT2P34897 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.15■□□□□ 0.34
SHMT2P34897 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.15■□□□□ 0.34
SHMT2P34897 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.15■□□□□ 0.34
SHMT2P34897 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.15■□□□□ 0.34
SHMT2P34897 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.15■□□□□ 0.34
SHMT2P34897 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.15■□□□□ 0.34
SHMT2P34897 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.15■□□□□ 0.34
SHMT2P34897 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHMT2P34897 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
SHMT2P34897 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.14■□□□□ 0.34
SHMT2P34897 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SHMT2P34897 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.34
SHMT2P34897 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SHMT2P34897 AC141586.5-201ENST00000624546 2050 ntBASIC17.14■□□□□ 0.33
SHMT2P34897 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.14■□□□□ 0.33
SHMT2P34897 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SHMT2P34897 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.14■□□□□ 0.33
SHMT2P34897 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SHMT2P34897 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.14■□□□□ 0.33
SHMT2P34897 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.14■□□□□ 0.33
SHMT2P34897 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 TPM4P1-201ENST00000436100 807 ntBASIC17.14■□□□□ 0.33
SHMT2P34897 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
SHMT2P34897 RN7SL510P-201ENST00000581311 263 ntBASIC17.14■□□□□ 0.33
SHMT2P34897 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms