Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
COL4A5P29400 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A5P29400 AC004890.2-204ENST00000481968 304 ntBASIC20.77■□□□□ 0.92
COL4A5P29400 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A5P29400 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
COL4A5P29400 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A5P29400 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A5P29400 MIR6080-201ENST00000617359 66 ntBASIC20.77■□□□□ 0.92
COL4A5P29400 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A5P29400 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A5P29400 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COL4A5P29400 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A5P29400 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
COL4A5P29400 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A5P29400 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A5P29400 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A5P29400 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A5P29400 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
COL4A5P29400 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.77■□□□□ 0.91
COL4A5P29400 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A5P29400 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
COL4A5P29400 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC20.77■□□□□ 0.91
COL4A5P29400 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
COL4A5P29400 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A5P29400 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
COL4A5P29400 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A5P29400 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A5P29400 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A5P29400 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A5P29400 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.76■□□□□ 0.91
COL4A5P29400 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.76■□□□□ 0.91
COL4A5P29400 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A5P29400 MIR4515-201ENST00000584082 81 ntBASIC20.76■□□□□ 0.91
COL4A5P29400 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.76■□□□□ 0.91
COL4A5P29400 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A5P29400 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COL4A5P29400 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A5P29400 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A5P29400 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
COL4A5P29400 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A5P29400 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COL4A5P29400 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 EDF1-203ENST00000371649 790 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A5P29400 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.75■□□□□ 0.91
COL4A5P29400 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.75■□□□□ 0.91
COL4A5P29400 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A5P29400 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.75■□□□□ 0.91
COL4A5P29400 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A5P29400 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
COL4A5P29400 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL4A5P29400 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.75■□□□□ 0.91
COL4A5P29400 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.75■□□□□ 0.91
COL4A5P29400 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COL4A5P29400 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A5P29400 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
COL4A5P29400 COX5BP8-201ENST00000416911 349 ntBASIC20.74■□□□□ 0.91
COL4A5P29400 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A5P29400 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.74■□□□□ 0.91
COL4A5P29400 AC069120.2-201ENST00000524091 540 ntBASIC20.74■□□□□ 0.91
COL4A5P29400 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A5P29400 AC025048.6-201ENST00000634326 1161 ntBASIC20.74■□□□□ 0.91
COL4A5P29400 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.74■□□□□ 0.91
COL4A5P29400 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 UXT-AS1-201ENST00000590504 1525 ntBASIC20.74■□□□□ 0.91
COL4A5P29400 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A5P29400 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
COL4A5P29400 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A5P29400 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms