Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.05■□□□□ 0.16
MSX1P28360 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.05■□□□□ 0.16
MSX1P28360 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX1P28360 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX1P28360 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX1P28360 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.05■□□□□ 0.16
MSX1P28360 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.05■□□□□ 0.16
MSX1P28360 AF228730.7-201ENST00000641842 219 ntBASIC16.05■□□□□ 0.16
MSX1P28360 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX1P28360 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MSX1P28360 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.04■□□□□ 0.16
MSX1P28360 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
MSX1P28360 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX1P28360 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.04■□□□□ 0.16
MSX1P28360 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
MSX1P28360 FAM197Y8-203ENST00000450145 560 ntBASIC16.04■□□□□ 0.16
MSX1P28360 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
MSX1P28360 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX1P28360 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.04■□□□□ 0.16
MSX1P28360 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.04■□□□□ 0.16
MSX1P28360 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX1P28360 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
MSX1P28360 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 AC018470.1-201ENST00000624790 3129 ntBASIC16.04■□□□□ 0.16
MSX1P28360 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX1P28360 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX1P28360 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
MSX1P28360 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX1P28360 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX1P28360 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
MSX1P28360 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX1P28360 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.03■□□□□ 0.16
MSX1P28360 MIR574-201ENST00000385209 96 ntBASIC16.03■□□□□ 0.16
MSX1P28360 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.03■□□□□ 0.16
MSX1P28360 KRT18P67-201ENST00000432816 1264 ntBASIC16.03■□□□□ 0.16
MSX1P28360 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.03■□□□□ 0.16
MSX1P28360 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.03■□□□□ 0.16
MSX1P28360 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.03■□□□□ 0.16
MSX1P28360 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX1P28360 AC109462.3-201ENST00000573934 613 ntBASIC16.03■□□□□ 0.16
MSX1P28360 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 AC019129.2-201ENST00000609837 1235 ntBASIC16.03■□□□□ 0.16
MSX1P28360 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX1P28360 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
MSX1P28360 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 AL049757.1-201ENST00000616842 1596 ntBASIC16.03■□□□□ 0.16
MSX1P28360 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
MSX1P28360 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX1P28360 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
MSX1P28360 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.02■□□□□ 0.16
MSX1P28360 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX1P28360 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
MSX1P28360 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX1P28360 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX1P28360 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms