Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.79■■□□□ 1.08
COL5A3P25940 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 SLC25A1P3-201ENST00000395415 828 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.79■■□□□ 1.08
COL5A3P25940 AL671277.1-201ENST00000429656 993 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 RBPMS2P1-201ENST00000437762 623 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 CRB3P1-201ENST00000449338 276 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 TSPY16P-201ENST00000449843 468 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 RNA5SP421-201ENST00000516864 134 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.79■■□□□ 1.08
COL5A3P25940 AC069120.2-201ENST00000524091 540 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.79■■□□□ 1.08
COL5A3P25940 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.79■■□□□ 1.08
COL5A3P25940 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.79■■□□□ 1.08
COL5A3P25940 AL161645.1-201ENST00000622716 1255 ntBASIC21.79■■□□□ 1.08
COL5A3P25940 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.79■■□□□ 1.08
COL5A3P25940 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
COL5A3P25940 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC21.79■■□□□ 1.08
COL5A3P25940 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL5A3P25940 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.78■■□□□ 1.08
COL5A3P25940 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 AC026150.2-201ENST00000564693 1156 ntBASIC21.78■■□□□ 1.08
COL5A3P25940 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.78■■□□□ 1.08
COL5A3P25940 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
COL5A3P25940 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC21.78■■□□□ 1.08
COL5A3P25940 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC21.78■■□□□ 1.08
COL5A3P25940 WASH6P-202ENST00000359512 1437 ntBASIC21.78■■□□□ 1.08
COL5A3P25940 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A3P25940 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.78■■□□□ 1.08
COL5A3P25940 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.77■■□□□ 1.08
COL5A3P25940 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.77■■□□□ 1.08
COL5A3P25940 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL5A3P25940 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.77■■□□□ 1.08
COL5A3P25940 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.77■■□□□ 1.08
COL5A3P25940 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.77■■□□□ 1.08
COL5A3P25940 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.77■■□□□ 1.08
COL5A3P25940 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
COL5A3P25940 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
COL5A3P25940 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC21.77■■□□□ 1.08
COL5A3P25940 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.77■■□□□ 1.08
COL5A3P25940 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.77■■□□□ 1.08
COL5A3P25940 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
COL5A3P25940 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.77■■□□□ 1.08
COL5A3P25940 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.77■■□□□ 1.08
COL5A3P25940 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.77■■□□□ 1.08
COL5A3P25940 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC21.77■■□□□ 1.08
COL5A3P25940 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC21.77■■□□□ 1.08
COL5A3P25940 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 AL031055.1-201ENST00000606362 631 ntBASIC21.77■■□□□ 1.08
COL5A3P25940 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A3P25940 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL5A3P25940 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC21.76■■□□□ 1.07
COL5A3P25940 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 MIR943-201ENST00000401286 94 ntBASIC21.76■■□□□ 1.07
COL5A3P25940 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.76■■□□□ 1.07
COL5A3P25940 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.76■■□□□ 1.07
COL5A3P25940 LINC01451-201ENST00000623792 534 ntBASIC21.76■■□□□ 1.07
COL5A3P25940 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.76■■□□□ 1.07
COL5A3P25940 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL5A3P25940 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL5A3P25940 LYSMD4-203ENST00000378904 2122 ntBASIC21.76■■□□□ 1.07
COL5A3P25940 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A3P25940 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL5A3P25940 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms