Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC111152.3-201ENST00000569699 673 ntBASIC17.44■□□□□ 0.38
MSH3P20585 AL732292.2-201ENST00000609649 430 ntBASIC17.44■□□□□ 0.38
MSH3P20585 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSH3P20585 AL355312.1-201ENST00000407115 2176 ntBASIC17.44■□□□□ 0.38
MSH3P20585 REXO1L11P-201ENST00000620964 1927 ntBASIC17.44■□□□□ 0.38
MSH3P20585 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
MSH3P20585 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
MSH3P20585 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.43■□□□□ 0.38
MSH3P20585 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
MSH3P20585 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
MSH3P20585 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
MSH3P20585 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.43■□□□□ 0.38
MSH3P20585 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.43■□□□□ 0.38
MSH3P20585 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.43■□□□□ 0.38
MSH3P20585 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.43■□□□□ 0.38
MSH3P20585 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.43■□□□□ 0.38
MSH3P20585 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.43■□□□□ 0.38
MSH3P20585 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.43■□□□□ 0.38
MSH3P20585 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
MSH3P20585 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.43■□□□□ 0.38
MSH3P20585 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
MSH3P20585 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH3P20585 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.42■□□□□ 0.38
MSH3P20585 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH3P20585 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
MSH3P20585 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.42■□□□□ 0.38
MSH3P20585 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
MSH3P20585 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
MSH3P20585 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 DUSP5P1-201ENST00000441325 1139 ntBASIC17.42■□□□□ 0.38
MSH3P20585 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.42■□□□□ 0.38
MSH3P20585 AC002558.1-201ENST00000488906 803 ntBASIC17.42■□□□□ 0.38
MSH3P20585 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.42■□□□□ 0.38
MSH3P20585 AC109462.3-201ENST00000573934 613 ntBASIC17.42■□□□□ 0.38
MSH3P20585 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.42■□□□□ 0.38
MSH3P20585 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
MSH3P20585 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH3P20585 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
MSH3P20585 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH3P20585 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
MSH3P20585 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 HLA-J-201ENST00000462773 1622 ntBASIC17.41■□□□□ 0.38
MSH3P20585 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.41■□□□□ 0.38
MSH3P20585 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.41■□□□□ 0.38
MSH3P20585 AC005104.2-201ENST00000427818 678 ntBASIC17.41■□□□□ 0.38
MSH3P20585 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 AC132008.2-207ENST00000454517 770 ntBASIC17.41■□□□□ 0.38
MSH3P20585 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.41■□□□□ 0.38
MSH3P20585 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms