Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A1P12109 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A1P12109 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A1P12109 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.17■□□□□ 0.66
COL6A1P12109 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL6A1P12109 AC002558.1-201ENST00000488906 803 ntBASIC19.17■□□□□ 0.66
COL6A1P12109 SLC25A6P2-201ENST00000497974 877 ntBASIC19.17■□□□□ 0.66
COL6A1P12109 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A1P12109 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 AL359881.2-201ENST00000602973 570 ntBASIC19.17■□□□□ 0.66
COL6A1P12109 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A1P12109 AL390754.1-201ENST00000619088 582 ntBASIC19.17■□□□□ 0.66
COL6A1P12109 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A1P12109 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A1P12109 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A1P12109 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A1P12109 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A1P12109 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.16■□□□□ 0.66
COL6A1P12109 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A1P12109 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL6A1P12109 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A1P12109 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.16■□□□□ 0.66
COL6A1P12109 RBPMS2P1-201ENST00000437762 623 ntBASIC19.16■□□□□ 0.66
COL6A1P12109 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A1P12109 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A1P12109 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.16■□□□□ 0.66
COL6A1P12109 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A1P12109 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL6A1P12109 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A1P12109 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A1P12109 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 AL135744.1-201ENST00000565098 629 ntBASIC19.16■□□□□ 0.66
COL6A1P12109 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A1P12109 AL158211.3-201ENST00000607385 239 ntBASIC19.16■□□□□ 0.66
COL6A1P12109 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.16■□□□□ 0.66
COL6A1P12109 AL358472.5-202ENST00000641448 1267 ntBASIC19.16■□□□□ 0.66
COL6A1P12109 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 AKAP8P1-201ENST00000434743 1349 ntBASIC19.16■□□□□ 0.66
COL6A1P12109 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A1P12109 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 AC008677.1-201ENST00000519230 1561 ntBASIC19.15■□□□□ 0.66
COL6A1P12109 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A1P12109 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.15■□□□□ 0.66
COL6A1P12109 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A1P12109 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 SPCS2P4-201ENST00000436160 681 ntBASIC19.15■□□□□ 0.66
COL6A1P12109 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A1P12109 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A1P12109 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.15■□□□□ 0.66
COL6A1P12109 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.15■□□□□ 0.66
COL6A1P12109 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL6A1P12109 AC129492.6-201ENST00000611383 1305 ntBASIC19.15■□□□□ 0.66
COL6A1P12109 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL6A1P12109 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A1P12109 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL6A1P12109 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
COL6A1P12109 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A1P12109 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.15■□□□□ 0.66
COL6A1P12109 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
COL6A1P12109 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.14■□□□□ 0.66
COL6A1P12109 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
COL6A1P12109 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms