Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HMGB1P09429 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
HMGB1P09429 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.63■□□□□ 0.89
HMGB1P09429 UPK3BP1-201ENST00000428678 509 ntBASIC20.63■□□□□ 0.89
HMGB1P09429 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.63■□□□□ 0.89
HMGB1P09429 AC099336.1-202ENST00000602961 463 ntBASIC20.63■□□□□ 0.89
HMGB1P09429 AC073592.5-201ENST00000624854 528 ntBASIC20.63■□□□□ 0.89
HMGB1P09429 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 PMPCAP1-201ENST00000508114 1576 ntBASIC20.63■□□□□ 0.89
HMGB1P09429 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HMGB1P09429 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HMGB1P09429 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
HMGB1P09429 FZD10-202ENST00000539839 3282 ntBASIC20.62■□□□□ 0.89
HMGB1P09429 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB1P09429 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB1P09429 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.62■□□□□ 0.89
HMGB1P09429 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.62■□□□□ 0.89
HMGB1P09429 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.62■□□□□ 0.89
HMGB1P09429 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.62■□□□□ 0.89
HMGB1P09429 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB1P09429 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB1P09429 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGB1P09429 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB1P09429 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HMGB1P09429 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGB1P09429 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HMGB1P09429 KLF4P1-201ENST00000412782 1185 ntBASIC20.61■□□□□ 0.89
HMGB1P09429 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HMGB1P09429 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGB1P09429 KRT16P4-201ENST00000453883 522 ntBASIC20.61■□□□□ 0.89
HMGB1P09429 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.61■□□□□ 0.89
HMGB1P09429 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGB1P09429 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGB1P09429 MIR5100-201ENST00000579544 119 ntBASIC20.61■□□□□ 0.89
HMGB1P09429 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGB1P09429 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGB1P09429 AP000867.4-201ENST00000641616 219 ntBASIC20.61■□□□□ 0.89
HMGB1P09429 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.61■□□□□ 0.89
HMGB1P09429 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HMGB1P09429 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB1P09429 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGB1P09429 AC093525.9-201ENST00000624961 1746 ntBASIC20.61■□□□□ 0.89
HMGB1P09429 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HMGB1P09429 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGB1P09429 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGB1P09429 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGB1P09429 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
HMGB1P09429 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB1P09429 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HMGB1P09429 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGB1P09429 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB1P09429 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB1P09429 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms