Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.2■□□□□ 0.98
COL4A1P02462 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
COL4A1P02462 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.2■□□□□ 0.98
COL4A1P02462 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 AL390955.2-201ENST00000603032 514 ntBASIC21.2■□□□□ 0.98
COL4A1P02462 REXO1L3P-201ENST00000622202 1288 ntBASIC21.2■□□□□ 0.98
COL4A1P02462 AC009093.7-201ENST00000623853 1223 ntBASIC21.2■□□□□ 0.98
COL4A1P02462 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A1P02462 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.2■□□□□ 0.98
COL4A1P02462 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A1P02462 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.19■□□□□ 0.98
COL4A1P02462 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.19■□□□□ 0.98
COL4A1P02462 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.19■□□□□ 0.98
COL4A1P02462 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.19■□□□□ 0.98
COL4A1P02462 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL4A1P02462 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
COL4A1P02462 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
COL4A1P02462 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A1P02462 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
COL4A1P02462 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC21.19■□□□□ 0.98
COL4A1P02462 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.19■□□□□ 0.98
COL4A1P02462 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL4A1P02462 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A1P02462 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A1P02462 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL4A1P02462 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A1P02462 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
COL4A1P02462 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
COL4A1P02462 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL4A1P02462 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A1P02462 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A1P02462 AL627223.1-201ENST00000416693 442 ntBASIC21.18■□□□□ 0.98
COL4A1P02462 AC140658.5-201ENST00000438532 169 ntBASIC21.18■□□□□ 0.98
COL4A1P02462 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A1P02462 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.18■□□□□ 0.98
COL4A1P02462 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.18■□□□□ 0.98
COL4A1P02462 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL4A1P02462 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL4A1P02462 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A1P02462 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
COL4A1P02462 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL4A1P02462 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
COL4A1P02462 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL4A1P02462 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A1P02462 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.17■□□□□ 0.98
COL4A1P02462 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A1P02462 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A1P02462 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A1P02462 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A1P02462 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A1P02462 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
COL4A1P02462 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A1P02462 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A1P02462 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.16■□□□□ 0.98
COL4A1P02462 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A1P02462 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL4A1P02462 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A1P02462 GPS2P2-201ENST00000430745 888 ntBASIC21.16■□□□□ 0.98
COL4A1P02462 ACTG1P14-201ENST00000446382 1122 ntBASIC21.16■□□□□ 0.98
COL4A1P02462 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
COL4A1P02462 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A1P02462 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A1P02462 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.16■□□□□ 0.98
COL4A1P02462 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL4A1P02462 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A1P02462 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms