Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 UPK3BP1-201ENST00000428678 509 ntBASIC20.23■□□□□ 0.83
CTDNEP1O95476 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.23■□□□□ 0.83
CTDNEP1O95476 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 AC011676.5-201ENST00000624864 2660 ntBASIC20.23■□□□□ 0.83
CTDNEP1O95476 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CTDNEP1O95476 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDNEP1O95476 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTDNEP1O95476 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDNEP1O95476 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 AC003669.1-201ENST00000334569 611 ntBASIC20.21■□□□□ 0.83
CTDNEP1O95476 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 KLF4P1-201ENST00000412782 1185 ntBASIC20.21■□□□□ 0.83
CTDNEP1O95476 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.21■□□□□ 0.83
CTDNEP1O95476 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDNEP1O95476 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDNEP1O95476 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.2■□□□□ 0.83
CTDNEP1O95476 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
CTDNEP1O95476 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDNEP1O95476 AC106886.4-201ENST00000623557 2502 ntBASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms