Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.86
PRPF40AO75400 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
PRPF40AO75400 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PRPF40AO75400 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
PRPF40AO75400 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.39■□□□□ 0.85
PRPF40AO75400 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.39■□□□□ 0.85
PRPF40AO75400 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.39■□□□□ 0.85
PRPF40AO75400 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.39■□□□□ 0.85
PRPF40AO75400 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PRPF40AO75400 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
PRPF40AO75400 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.39■□□□□ 0.85
PRPF40AO75400 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRPF40AO75400 AC046185.3-201ENST00000623228 1824 ntBASIC20.39■□□□□ 0.85
PRPF40AO75400 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.39■□□□□ 0.85
PRPF40AO75400 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 AL603756.1-201ENST00000606511 2163 ntBASIC20.38■□□□□ 0.85
PRPF40AO75400 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PRPF40AO75400 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
PRPF40AO75400 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
PRPF40AO75400 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.38■□□□□ 0.85
PRPF40AO75400 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 AL162727.3-201ENST00000635661 2787 ntBASIC20.38■□□□□ 0.85
PRPF40AO75400 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.38■□□□□ 0.85
PRPF40AO75400 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRPF40AO75400 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC20.38■□□□□ 0.85
PRPF40AO75400 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
PRPF40AO75400 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PRPF40AO75400 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
PRPF40AO75400 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 AC008687.5-201ENST00000593746 558 ntBASIC20.37■□□□□ 0.85
PRPF40AO75400 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.37■□□□□ 0.85
PRPF40AO75400 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC20.37■□□□□ 0.85
PRPF40AO75400 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRPF40AO75400 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PRPF40AO75400 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC20.36■□□□□ 0.85
PRPF40AO75400 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PRPF40AO75400 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
PRPF40AO75400 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PRPF40AO75400 MIR1224-201ENST00000408193 85 ntBASIC20.36■□□□□ 0.85
PRPF40AO75400 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.36■□□□□ 0.85
PRPF40AO75400 AL512604.3-201ENST00000569583 964 ntBASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms