Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.87■□□□□ 0.29
SLC28A1O00337 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.86■□□□□ 0.29
SLC28A1O00337 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SLC28A1O00337 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SLC28A1O00337 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 AC211429.1-201ENST00000415277 523 ntBASIC16.86■□□□□ 0.29
SLC28A1O00337 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SLC28A1O00337 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.86■□□□□ 0.29
SLC28A1O00337 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.86■□□□□ 0.29
SLC28A1O00337 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.86■□□□□ 0.29
SLC28A1O00337 LINC01023-201ENST00000606054 436 ntBASIC16.86■□□□□ 0.29
SLC28A1O00337 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SLC28A1O00337 CROCCP1-201ENST00000426910 5675 ntBASIC16.86■□□□□ 0.29
SLC28A1O00337 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.86■□□□□ 0.29
SLC28A1O00337 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SLC28A1O00337 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SLC28A1O00337 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.86■□□□□ 0.29
SLC28A1O00337 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.86■□□□□ 0.29
SLC28A1O00337 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.86■□□□□ 0.29
SLC28A1O00337 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.86■□□□□ 0.29
SLC28A1O00337 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.86■□□□□ 0.29
SLC28A1O00337 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SLC28A1O00337 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SLC28A1O00337 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SLC28A1O00337 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.85■□□□□ 0.29
SLC28A1O00337 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.85■□□□□ 0.29
SLC28A1O00337 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 AC063952.2-201ENST00000498792 1227 ntBASIC16.85■□□□□ 0.29
SLC28A1O00337 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.85■□□□□ 0.29
SLC28A1O00337 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.85■□□□□ 0.29
SLC28A1O00337 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.85■□□□□ 0.29
SLC28A1O00337 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 AC011676.5-201ENST00000624864 2660 ntBASIC16.85■□□□□ 0.29
SLC28A1O00337 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SLC28A1O00337 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SLC28A1O00337 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SLC28A1O00337 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.84■□□□□ 0.29
SLC28A1O00337 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SLC28A1O00337 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SLC28A1O00337 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.84■□□□□ 0.29
SLC28A1O00337 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.84■□□□□ 0.29
SLC28A1O00337 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
SLC28A1O00337 AC007967.3-201ENST00000434308 558 ntBASIC16.84■□□□□ 0.29
SLC28A1O00337 SPDYE13P-201ENST00000445314 798 ntBASIC16.84■□□□□ 0.29
SLC28A1O00337 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.84■□□□□ 0.29
SLC28A1O00337 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.84■□□□□ 0.29
SLC28A1O00337 AC083849.1-201ENST00000615227 514 ntBASIC16.84■□□□□ 0.29
SLC28A1O00337 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.84■□□□□ 0.29
SLC28A1O00337 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SLC28A1O00337 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SLC28A1O00337 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SLC28A1O00337 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SLC28A1O00337 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms