Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC28AQ8IWP9 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28AQ8IWP9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC28AQ8IWP9 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28AQ8IWP9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CCDC28AQ8IWP9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CCDC28AQ8IWP9 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC28AQ8IWP9 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28AQ8IWP9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC28AQ8IWP9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28AQ8IWP9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28AQ8IWP9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC28AQ8IWP9 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC28AQ8IWP9 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28AQ8IWP9 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28AQ8IWP9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28AQ8IWP9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 AC092803.2-201ENST00000564287 1899 ntBASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 AL139125.2-201ENST00000623134 1869 ntBASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28AQ8IWP9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28AQ8IWP9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 ABCB10P4-201ENST00000566803 2184 ntBASIC20.17■□□□□ 0.82
CCDC28AQ8IWP9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28AQ8IWP9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC28AQ8IWP9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28AQ8IWP9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28AQ8IWP9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28AQ8IWP9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28AQ8IWP9 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28AQ8IWP9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC28AQ8IWP9 RNF165-205ENST00000588679 2904 ntBASIC20.15■□□□□ 0.82
CCDC28AQ8IWP9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC28AQ8IWP9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC28AQ8IWP9 AL031258.1-201ENST00000623562 325 ntBASIC20.14■□□□□ 0.81
CCDC28AQ8IWP9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC28AQ8IWP9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CCDC28AQ8IWP9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CCDC28AQ8IWP9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC28AQ8IWP9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC28AQ8IWP9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC28AQ8IWP9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC28AQ8IWP9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC28AQ8IWP9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CCDC28AQ8IWP9 AC142381.3-201ENST00000568208 1670 ntBASIC20.12■□□□□ 0.81
CCDC28AQ8IWP9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC28AQ8IWP9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC28AQ8IWP9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC28AQ8IWP9 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC28AQ8IWP9 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC28AQ8IWP9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC28AQ8IWP9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC28AQ8IWP9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC28AQ8IWP9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC28AQ8IWP9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC28AQ8IWP9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC28AQ8IWP9 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms