Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
XRCC3O43542 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.83■□□□□ 0.92
XRCC3O43542 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC3O43542 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC3O43542 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.82■□□□□ 0.92
XRCC3O43542 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC3O43542 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
XRCC3O43542 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
XRCC3O43542 AC110285.7-201ENST00000624417 1536 ntBASIC20.82■□□□□ 0.92
XRCC3O43542 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC3O43542 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
XRCC3O43542 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
XRCC3O43542 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.81■□□□□ 0.92
XRCC3O43542 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.81■□□□□ 0.92
XRCC3O43542 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC3O43542 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.81■□□□□ 0.92
XRCC3O43542 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC3O43542 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC3O43542 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.8■□□□□ 0.92
XRCC3O43542 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC3O43542 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
XRCC3O43542 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC3O43542 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC20.8■□□□□ 0.92
XRCC3O43542 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC3O43542 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC3O43542 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.8■□□□□ 0.92
XRCC3O43542 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC3O43542 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.8■□□□□ 0.92
XRCC3O43542 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
XRCC3O43542 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC3O43542 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.79■□□□□ 0.92
XRCC3O43542 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.79■□□□□ 0.92
XRCC3O43542 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC3O43542 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.78■□□□□ 0.92
XRCC3O43542 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC3O43542 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.78■□□□□ 0.92
XRCC3O43542 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC3O43542 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC3O43542 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC3O43542 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC3O43542 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC3O43542 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC3O43542 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC3O43542 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
XRCC3O43542 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC3O43542 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC3O43542 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
XRCC3O43542 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.76■□□□□ 0.91
XRCC3O43542 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC3O43542 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC3O43542 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC3O43542 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.75■□□□□ 0.91
XRCC3O43542 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC3O43542 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.75■□□□□ 0.91
XRCC3O43542 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC3O43542 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC3O43542 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
XRCC3O43542 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC3O43542 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC3O43542 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC3O43542 HNRNPLP2-201ENST00000568980 1570 ntBASIC20.73■□□□□ 0.91
XRCC3O43542 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC3O43542 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC3O43542 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC3O43542 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC3O43542 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC3O43542 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.72■□□□□ 0.91
XRCC3O43542 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC3O43542 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.71■□□□□ 0.91
XRCC3O43542 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
XRCC3O43542 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC3O43542 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC3O43542 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.71■□□□□ 0.91
XRCC3O43542 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.71■□□□□ 0.91
XRCC3O43542 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.71■□□□□ 0.91
XRCC3O43542 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC3O43542 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC3O43542 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC3O43542 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC3O43542 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
XRCC3O43542 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
XRCC3O43542 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
XRCC3O43542 AC096887.2-201ENST00000623443 1957 ntBASIC20.69■□□□□ 0.9
XRCC3O43542 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
XRCC3O43542 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
XRCC3O43542 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
XRCC3O43542 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
XRCC3O43542 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.68■□□□□ 0.9
XRCC3O43542 SUZ12P1-203ENST00000578195 985 ntBASIC20.68■□□□□ 0.9
XRCC3O43542 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
XRCC3O43542 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
XRCC3O43542 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
XRCC3O43542 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
XRCC3O43542 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
XRCC3O43542 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
XRCC3O43542 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
XRCC3O43542 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
XRCC3O43542 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.66■□□□□ 0.9
XRCC3O43542 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
XRCC3O43542 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms