Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 SLC25A1P3-201ENST00000395415 828 ntBASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 AC145285.6-201ENST00000604632 637 ntBASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 AC092865.7-201ENST00000641832 219 ntBASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCAL1Q9NZC9 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 HMGA1P5-201ENST00000412453 271 ntBASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 KRT18P65-201ENST00000439811 1286 ntBASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCAL1Q9NZC9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 AC113404.2-201ENST00000507884 177 ntBASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCAL1Q9NZC9 AL662844.4-201ENST00000606367 2838 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms