Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 AL596257.1-201ENST00000641463 2694 ntBASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 AL355312.1-201ENST00000407115 2176 ntBASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHMP1AQ9HD42 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 AC092865.7-201ENST00000641832 219 ntBASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 MIR600HG-201ENST00000449175 5984 ntBASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 KRT17P2-201ENST00000300992 1314 ntBASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms