Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.78■□□□□ 0.28
PIF1Q9H611 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PIF1Q9H611 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PIF1Q9H611 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.78■□□□□ 0.28
PIF1Q9H611 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PIF1Q9H611 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PIF1Q9H611 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.78■□□□□ 0.28
PIF1Q9H611 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PIF1Q9H611 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.77■□□□□ 0.28
PIF1Q9H611 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PIF1Q9H611 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PIF1Q9H611 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.77■□□□□ 0.28
PIF1Q9H611 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.77■□□□□ 0.28
PIF1Q9H611 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PIF1Q9H611 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.77■□□□□ 0.28
PIF1Q9H611 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.77■□□□□ 0.28
PIF1Q9H611 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.77■□□□□ 0.28
PIF1Q9H611 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.77■□□□□ 0.28
PIF1Q9H611 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.77■□□□□ 0.28
PIF1Q9H611 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
PIF1Q9H611 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.77■□□□□ 0.28
PIF1Q9H611 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.77■□□□□ 0.28
PIF1Q9H611 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.77■□□□□ 0.28
PIF1Q9H611 LINC01451-201ENST00000623792 534 ntBASIC16.77■□□□□ 0.28
PIF1Q9H611 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PIF1Q9H611 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PIF1Q9H611 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
PIF1Q9H611 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.77■□□□□ 0.27
PIF1Q9H611 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PIF1Q9H611 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PIF1Q9H611 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PIF1Q9H611 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PIF1Q9H611 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
PIF1Q9H611 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
PIF1Q9H611 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PIF1Q9H611 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PIF1Q9H611 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.77■□□□□ 0.27
PIF1Q9H611 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
PIF1Q9H611 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
PIF1Q9H611 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PIF1Q9H611 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.76■□□□□ 0.27
PIF1Q9H611 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.76■□□□□ 0.27
PIF1Q9H611 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.76■□□□□ 0.27
PIF1Q9H611 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.76■□□□□ 0.27
PIF1Q9H611 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
PIF1Q9H611 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 AC010947.1-201ENST00000623454 693 ntBASIC16.76■□□□□ 0.27
PIF1Q9H611 AL157888.1-201ENST00000631930 593 ntBASIC16.76■□□□□ 0.27
PIF1Q9H611 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.76■□□□□ 0.27
PIF1Q9H611 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
PIF1Q9H611 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
PIF1Q9H611 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PIF1Q9H611 AC105020.1-201ENST00000435356 2205 ntBASIC16.76■□□□□ 0.27
PIF1Q9H611 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.75■□□□□ 0.27
PIF1Q9H611 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PIF1Q9H611 KRT18P22-201ENST00000402024 1347 ntBASIC16.75■□□□□ 0.27
PIF1Q9H611 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.75■□□□□ 0.27
PIF1Q9H611 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms