Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CR383656.12-201ENST00000549567 513 ntBASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 AL596325.1-201ENST00000563991 1082 ntBASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 SPDYE22P-201ENST00000582158 798 ntBASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 GNAS-203ENST00000306120 1878 ntBASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 AL031598.1-201ENST00000561511 1773 ntBASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 COX5BP8-201ENST00000416911 349 ntBASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 UXT-AS1-201ENST00000590504 1525 ntBASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.79■□□□□ 0.92
ZNF541Q9H0D2 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 NME2P1-201ENST00000426182 414 ntBASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 AC069120.2-201ENST00000524091 540 ntBASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 AL662799.1-202ENST00000614205 422 ntBASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 MIR6080-201ENST00000617359 66 ntBASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 MRPS18AP1-201ENST00000414458 589 ntBASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 RN7SL692P-201ENST00000464677 288 ntBASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF541Q9H0D2 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 AL135999.2-201ENST00000622438 1686 ntBASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF541Q9H0D2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 SPDYE7P-202ENST00000420373 878 ntBASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms