Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL513190.1-201ENST00000621254 727 ntBASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 AL590787.1-201ENST00000568856 1315 ntBASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 AL355312.1-201ENST00000407115 2176 ntBASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PAAF1Q9BRP4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 AP002414.1-201ENST00000391405 1147 ntBASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 PRSS29P-201ENST00000440800 595 ntBASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 AC092183.1-201ENST00000469884 875 ntBASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.6■□□□□ 0.57
PAAF1Q9BRP4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 ACTG1P4-201ENST00000425123 1122 ntBASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms