Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 PCDHA14-201ENST00000506751 2298 ntBASIC15.32■□□□□ 0.04
NKX3-1Q99801 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 AC128688.1-201ENST00000487626 519 ntBASIC15.32■□□□□ 0.04
NKX3-1Q99801 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 DUT-205ENST00000558813 769 ntTSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 AC010331.1-201ENST00000611423 582 ntBASIC15.32■□□□□ 0.04
NKX3-1Q99801 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 AC022898.2-201ENST00000616822 1312 ntBASIC15.32■□□□□ 0.04
NKX3-1Q99801 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
NKX3-1Q99801 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NKX3-1Q99801 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AGGF1P2-201ENST00000426656 2106 ntBASIC15.31■□□□□ 0.04
NKX3-1Q99801 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AL118508.1-201ENST00000613502 2345 ntBASIC15.31■□□□□ 0.04
NKX3-1Q99801 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AC092865.7-201ENST00000641832 219 ntBASIC15.31■□□□□ 0.04
NKX3-1Q99801 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms