Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 HLA-J-201ENST00000462773 1622 ntBASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 KRT8P47-201ENST00000604727 1398 ntBASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 AC079776.4-201ENST00000511039 504 ntBASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP4CQ96CF2 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.89■□□□□ 0.94
CHMP4CQ96CF2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP4CQ96CF2 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP4CQ96CF2 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.89■□□□□ 0.94
CHMP4CQ96CF2 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CHMP4CQ96CF2 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 AC125634.1-201ENST00000438758 1403 ntBASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 KRT8P10-201ENST00000450021 1447 ntBASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 MRPL3P1-201ENST00000400109 1033 ntBASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 AC104692.2-201ENST00000603054 253 ntBASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 AL138831.2-201ENST00000606564 490 ntBASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 BX276092.7-203ENST00000637198 1536 ntBASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4CQ96CF2 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 TP73-AS1-207ENST00000624167 988 ntBASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms