Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SOD2-205ENST00000444946 917 ntTSL 2 BASIC19.4■□□□□ 0.78e-11■□□□□ 11.3
UPF1Q92900 STARD4-212ENST00000512160 3500 ntTSL 2 BASIC8.92□□□□□ -0.989e-8■□□□□ 11.3
UPF1Q92900 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.511e-7■□□□□ 11.3
UPF1Q92900 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.372e-10■□□□□ 11.3
UPF1Q92900 ZFAS1-207ENST00000458653 596 ntTSL 239.33■■■■□ 3.893e-9■□□□□ 11.3
UPF1Q92900 ZFAS1-202ENST00000371743 1008 ntTSL 1 (best)36.21■■■■□ 3.393e-9■□□□□ 11.3
UPF1Q92900 ZFAS1-203ENST00000417721 860 ntTSL 1 (best)36.12■■■■□ 3.373e-9■□□□□ 11.3
UPF1Q92900 ZFAS1-205ENST00000441722 946 ntTSL 1 (best)29.68■■■□□ 2.343e-9■□□□□ 11.3
UPF1Q92900 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC29.68■■■□□ 2.343e-9■□□□□ 11.3
UPF1Q92900 ZFAS1-209ENST00000620594 508 ntTSL 311.55□□□□□ -0.563e-9■□□□□ 11.3
UPF1Q92900 ZFAS1-201ENST00000326677 504 ntTSL 1 (best)11.51□□□□□ -0.573e-9■□□□□ 11.3
UPF1Q92900 ZFAS1-204ENST00000428008 566 ntTSL 211.51□□□□□ -0.573e-9■□□□□ 11.3
UPF1Q92900 GPX3-205ENST00000520597 632 ntTSL 222.45■■□□□ 1.185e-8■□□□□ 11.2
UPF1Q92900 GPX3-203ENST00000519214 834 ntTSL 520.64■□□□□ 0.895e-8■□□□□ 11.2
UPF1Q92900 GPX3-207ENST00000521650 467 ntTSL 218.55■□□□□ 0.565e-8■□□□□ 11.2
UPF1Q92900 TOP2A-202ENST00000577541 420 ntTSL 210.06□□□□□ -0.86e-17■□□□□ 11.2
UPF1Q92900 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.716e-17■□□□□ 11.2
UPF1Q92900 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.941e-22■□□□□ 11.2
UPF1Q92900 ALDOC-202ENST00000395319 1519 ntTSL 5 BASIC16■□□□□ 0.151e-22■□□□□ 11.2
UPF1Q92900 ALDOC-203ENST00000395321 1722 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.071e-22■□□□□ 11.2
UPF1Q92900 LMAN2-204ENST00000504071 562 ntTSL 225.26■■□□□ 1.632e-7■□□□□ 11.2
UPF1Q92900 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.522e-7■□□□□ 11.2
UPF1Q92900 ORC6-206ENST00000568364 888 ntTSL 5 BASIC22.58■■□□□ 1.212e-6■□□□□ 11.2
UPF1Q92900 ORC6-209ENST00000575571 771 ntTSL 317.57■□□□□ 0.42e-6■□□□□ 11.2
UPF1Q92900 SDHC-206ENST00000470743 832 ntTSL 514.81□□□□□ -0.041e-13■□□□□ 11.2
UPF1Q92900 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC20.72■□□□□ 0.911e-9■□□□□ 11.2
UPF1Q92900 PCSK6-205ENST00000558433 543 ntTSL 417.02■□□□□ 0.321e-9■□□□□ 11.2
UPF1Q92900 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.281e-9■□□□□ 11.2
UPF1Q92900 SLC9A8-204ENST00000490250 4942 ntTSL 212.71□□□□□ -0.371e-9■□□□□ 11.2
UPF1Q92900 SLC9A8-202ENST00000417961 6309 ntTSL 2 BASIC12.2□□□□□ -0.461e-9■□□□□ 11.2
UPF1Q92900 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.622e-9■□□□□ 11.2
UPF1Q92900 CBFA2T3-205ENST00000563856 2380 ntTSL 220.38■□□□□ 0.854e-7■□□□□ 11.2
UPF1Q92900 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.242e-19■□□□□ 11.2
UPF1Q92900 GTPBP2-203ENST00000419497 1394 ntTSL 222.1■■□□□ 1.133e-7■□□□□ 11.2
UPF1Q92900 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.393e-7■□□□□ 11.2
UPF1Q92900 GTPBP2-204ENST00000432918 1850 ntTSL 317.04■□□□□ 0.323e-7■□□□□ 11.2
UPF1Q92900 GTPBP2-201ENST00000307114 2830 ntTSL 2 BASIC12.74□□□□□ -0.373e-7■□□□□ 11.2
UPF1Q92900 GTPBP2-208ENST00000476510 2816 ntTSL 512.68□□□□□ -0.383e-7■□□□□ 11.2
UPF1Q92900 GTPBP2-210ENST00000496137 516 ntTSL 39.29□□□□□ -0.923e-7■□□□□ 11.2
UPF1Q92900 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC14.66□□□□□ -0.068e-10■□□□□ 11.2
UPF1Q92900 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.28□□□□□ -0.128e-10■□□□□ 11.2
UPF1Q92900 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC14.25□□□□□ -0.138e-10■□□□□ 11.2
UPF1Q92900 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC13.63□□□□□ -0.238e-10■□□□□ 11.2
UPF1Q92900 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.62□□□□□ -0.238e-10■□□□□ 11.2
UPF1Q92900 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.57□□□□□ -0.248e-10■□□□□ 11.2
UPF1Q92900 IKZF1-201ENST00000331340 6189 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.588e-10■□□□□ 11.2
UPF1Q92900 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.262e-9■□□□□ 11.2
UPF1Q92900 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.56■□□□□ 0.722e-9■□□□□ 11.2
UPF1Q92900 ELP3-204ENST00000518112 2059 ntTSL 28.77□□□□□ -13e-6■□□□□ 11.2
UPF1Q92900 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.181e-6■□□□□ 11.2
UPF1Q92900 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.216e-7■□□□□ 11.1
UPF1Q92900 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.046e-6■□□□□ 11.1
UPF1Q92900 TFPI-208ENST00000435414 687 ntTSL 510.23□□□□□ -0.773e-6■□□□□ 11.1
UPF1Q92900 TFPI-211ENST00000481132 7690 ntTSL 27.55□□□□□ -1.23e-6■□□□□ 11.1
UPF1Q92900 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.33e-6■□□□□ 11.1
UPF1Q92900 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.423e-6■□□□□ 11.1
UPF1Q92900 PDCL-203ENST00000436632 404 ntTSL 311.65□□□□□ -0.549e-7■□□□□ 11.1
UPF1Q92900 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.125e-7■□□□□ 11.1
UPF1Q92900 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.444e-6■□□□□ 11.1
UPF1Q92900 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.394e-6■□□□□ 11.1
UPF1Q92900 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.614e-6■□□□□ 11.1
UPF1Q92900 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.234e-6■□□□□ 11.1
UPF1Q92900 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.78□□□□□ -0.044e-6■□□□□ 11.1
UPF1Q92900 SOCS2-208ENST00000549510 581 ntTSL 213.12□□□□□ -0.314e-6■□□□□ 11.1
UPF1Q92900 SOCS2-211ENST00000551883 719 ntTSL 210.28□□□□□ -0.764e-6■□□□□ 11.1
UPF1Q92900 SH3GLB2-208ENST00000455407 837 ntTSL 241.42■■■■■ 4.223e-7■□□□□ 11.1
UPF1Q92900 SH3GLB2-212ENST00000483980 1015 ntTSL 240.26■■■■■ 4.043e-7■□□□□ 11.1
UPF1Q92900 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC39.64■■■■□ 3.946e-8■□□□□ 11.1
UPF1Q92900 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC39.64■■■■□ 3.946e-8■□□□□ 11.1
UPF1Q92900 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.036e-8■□□□□ 11.1
UPF1Q92900 DHRSX-207ENST00000478825 679 ntTSL 232.17■■■□□ 2.749e-6■□□□□ 11.1
UPF1Q92900 DHRSX-203ENST00000430536 490 ntTSL 232■■■□□ 2.719e-6■□□□□ 11.1
UPF1Q92900 SH3GLB2-204ENST00000416230 720 ntTSL 231.8■■■□□ 2.683e-7■□□□□ 11.1
UPF1Q92900 DHRSX-202ENST00000412516 744 ntTSL 231.01■■■□□ 2.559e-6■□□□□ 11.1
UPF1Q92900 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC30.29■■■□□ 2.446e-8■□□□□ 11.1
UPF1Q92900 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.1■■■□□ 2.416e-8■□□□□ 11.1
UPF1Q92900 TINAGL1-207ENST00000478398 765 ntTSL 328.72■■■□□ 2.199e-6■□□□□ 11.1
UPF1Q92900 TINAGL1-203ENST00000461030 820 ntTSL 527.32■■□□□ 1.969e-6■□□□□ 11.1
UPF1Q92900 ZFAND2B-214ENST00000464902 1851 ntTSL 226.36■■□□□ 1.816e-8■□□□□ 11.1
UPF1Q92900 TINAGL1-205ENST00000466998 680 ntTSL 226.12■■□□□ 1.779e-6■□□□□ 11.1
UPF1Q92900 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC25.18■■□□□ 1.626e-8■□□□□ 11.1
UPF1Q92900 DHRSX-205ENST00000444280 797 ntTSL 224.9■■□□□ 1.589e-6■□□□□ 11.1
UPF1Q92900 ZBED1-205ENST00000515319 905 ntTSL 224.86■■□□□ 1.579e-6■□□□□ 11.1
UPF1Q92900 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.356e-8■□□□□ 11.1
UPF1Q92900 HDAC5-207ENST00000588261 846 ntTSL 321.87■■□□□ 1.099e-6■□□□□ 11.1
UPF1Q92900 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.28■■□□□ 19e-6■□□□□ 11.1
UPF1Q92900 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.979e-6■□□□□ 11.1
UPF1Q92900 ZFAND2B-210ENST00000425849 484 ntTSL 320.68■□□□□ 0.96e-8■□□□□ 11.1
UPF1Q92900 LINC01226-204ENST00000639839 554 ntTSL 420.39■□□□□ 0.859e-6■□□□□ 11.1
UPF1Q92900 ZFAND2B-217ENST00000475533 971 ntTSL 519.67■□□□□ 0.746e-8■□□□□ 11.1
UPF1Q92900 PTDSS2-211ENST00000531411 624 ntTSL 219.17■□□□□ 0.669e-6■□□□□ 11.1
UPF1Q92900 LINC01226-207ENST00000640226 551 ntTSL 417.72■□□□□ 0.439e-6■□□□□ 11.1
UPF1Q92900 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.49e-6■□□□□ 11.1
UPF1Q92900 TYRO3-209ENST00000568490 2004 nt17.08■□□□□ 0.339e-6■□□□□ 11.1
UPF1Q92900 SPG7-203ENST00000561702 2042 ntTSL 216.7■□□□□ 0.269e-6■□□□□ 11.1
UPF1Q92900 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.179e-6■□□□□ 11.1
UPF1Q92900 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.179e-6■□□□□ 11.1
UPF1Q92900 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.149e-6■□□□□ 11.1
UPF1Q92900 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.139e-6■□□□□ 11.1
UPF1Q92900 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.48■□□□□ 0.079e-6■□□□□ 11.1
Retrieved 100 of 15,879 protein–RNA pairs in 85.5 ms