Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PRSS29P-201ENST00000440800 595 ntBASIC17.03■□□□□ 0.32
LMX1AQ8TE12 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 AL353135.1-201ENST00000606729 504 ntBASIC17.03■□□□□ 0.32
LMX1AQ8TE12 AL805961.1-202ENST00000641562 540 ntBASIC17.03■□□□□ 0.32
LMX1AQ8TE12 AC134684.3-201ENST00000641758 218 ntBASIC17.03■□□□□ 0.32
LMX1AQ8TE12 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 GPR89P-201ENST00000407924 1495 ntBASIC17.02■□□□□ 0.32
LMX1AQ8TE12 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 MRPL20P1-201ENST00000400819 433 ntBASIC17.02■□□□□ 0.32
LMX1AQ8TE12 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.02■□□□□ 0.32
LMX1AQ8TE12 HCG4B-203ENST00000450128 991 ntBASIC17.02■□□□□ 0.32
LMX1AQ8TE12 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 AC092865.6-201ENST00000642101 219 ntBASIC17.02■□□□□ 0.32
LMX1AQ8TE12 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1AQ8TE12 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.02■□□□□ 0.31
LMX1AQ8TE12 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LMX1AQ8TE12 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
LMX1AQ8TE12 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
LMX1AQ8TE12 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.31
LMX1AQ8TE12 AC002310.6-201ENST00000624451 1377 ntBASIC17.02■□□□□ 0.31
LMX1AQ8TE12 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
LMX1AQ8TE12 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 AC009113.1-201ENST00000570267 2443 ntBASIC17.01■□□□□ 0.31
LMX1AQ8TE12 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 AP001160.2-201ENST00000596071 487 ntBASIC17.01■□□□□ 0.31
LMX1AQ8TE12 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1AQ8TE12 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
LMX1AQ8TE12 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17■□□□□ 0.31
LMX1AQ8TE12 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
LMX1AQ8TE12 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17■□□□□ 0.31
LMX1AQ8TE12 AC211486.1-202ENST00000416371 468 ntBASIC17■□□□□ 0.31
LMX1AQ8TE12 MCCD1P2-201ENST00000423228 335 ntBASIC17■□□□□ 0.31
LMX1AQ8TE12 AC211476.1-201ENST00000503899 468 ntBASIC17■□□□□ 0.31
LMX1AQ8TE12 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
LMX1AQ8TE12 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17■□□□□ 0.31
LMX1AQ8TE12 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms