Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS52Q8N1B4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 ESPNP-201ENST00000270691 2015 ntBASIC19.01■□□□□ 0.63
VPS52Q8N1B4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 BX005266.1-201ENST00000473402 457 ntBASIC19.01■□□□□ 0.63
VPS52Q8N1B4 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 UNC93B6-202ENST00000528242 690 ntBASIC19.01■□□□□ 0.63
VPS52Q8N1B4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS52Q8N1B4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19■□□□□ 0.63
VPS52Q8N1B4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
VPS52Q8N1B4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19■□□□□ 0.63
VPS52Q8N1B4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19■□□□□ 0.63
VPS52Q8N1B4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 LAGE3P1-201ENST00000425356 484 ntBASIC19■□□□□ 0.63
VPS52Q8N1B4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19■□□□□ 0.63
VPS52Q8N1B4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19■□□□□ 0.63
VPS52Q8N1B4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19■□□□□ 0.63
VPS52Q8N1B4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
VPS52Q8N1B4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC19■□□□□ 0.63
VPS52Q8N1B4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19■□□□□ 0.63
VPS52Q8N1B4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
VPS52Q8N1B4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19■□□□□ 0.63
VPS52Q8N1B4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
VPS52Q8N1B4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19■□□□□ 0.63
VPS52Q8N1B4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS52Q8N1B4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 NOC2LP1-202ENST00000452600 2235 ntBASIC18.99■□□□□ 0.63
VPS52Q8N1B4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 AL691403.2-201ENST00000618460 490 ntBASIC18.99■□□□□ 0.63
VPS52Q8N1B4 AC055717.3-201ENST00000622967 595 ntBASIC18.99■□□□□ 0.63
VPS52Q8N1B4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 AC079776.2-201ENST00000641154 1609 ntBASIC18.99■□□□□ 0.63
VPS52Q8N1B4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS52Q8N1B4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 UPF3AP3-201ENST00000420996 769 ntBASIC18.98■□□□□ 0.63
VPS52Q8N1B4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms