Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 AC074386.1-202ENST00000463561 864 ntBASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 AC023141.13-201ENST00000604991 943 ntBASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 PI4KAP1-204ENST00000612579 1703 ntBASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NPAS3Q8IXF0 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 ACTG1P14-201ENST00000446382 1122 ntBASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 AC091812.2-201ENST00000619081 385 ntBASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 REXO1L9P-201ENST00000604264 2108 ntBASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.05■□□□□ 0.48
NPAS3Q8IXF0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 AC106028.4-201ENST00000614509 607 ntBASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 AC007064.4-201ENST00000637740 555 ntBASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
NPAS3Q8IXF0 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 AP000997.3-201ENST00000623333 2250 ntBASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPAS3Q8IXF0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms