Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.82■□□□□ 0.44
USP39Q53GS9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
USP39Q53GS9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 PKD1P1-201ENST00000458669 6805 ntBASIC17.81■□□□□ 0.44
USP39Q53GS9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
USP39Q53GS9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
USP39Q53GS9 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.81■□□□□ 0.44
USP39Q53GS9 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.81■□□□□ 0.44
USP39Q53GS9 DNAJB3-202ENST00000449667 1266 ntBASIC17.81■□□□□ 0.44
USP39Q53GS9 PRYP5-201ENST00000451909 266 ntBASIC17.81■□□□□ 0.44
USP39Q53GS9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.81■□□□□ 0.44
USP39Q53GS9 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.81■□□□□ 0.44
USP39Q53GS9 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.81■□□□□ 0.44
USP39Q53GS9 AC064836.3-201ENST00000607928 673 ntBASIC17.81■□□□□ 0.44
USP39Q53GS9 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.81■□□□□ 0.44
USP39Q53GS9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.81■□□□□ 0.44
USP39Q53GS9 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.81■□□□□ 0.44
USP39Q53GS9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.81■□□□□ 0.44
USP39Q53GS9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.81■□□□□ 0.44
USP39Q53GS9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP39Q53GS9 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.81■□□□□ 0.44
USP39Q53GS9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
USP39Q53GS9 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 AC135776.1-201ENST00000319817 2481 ntBASIC17.8■□□□□ 0.44
USP39Q53GS9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
USP39Q53GS9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.8■□□□□ 0.44
USP39Q53GS9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
USP39Q53GS9 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
USP39Q53GS9 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.8■□□□□ 0.44
USP39Q53GS9 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.8■□□□□ 0.44
USP39Q53GS9 AC108751.1-201ENST00000490852 363 ntBASIC17.8■□□□□ 0.44
USP39Q53GS9 AC122714.2-201ENST00000502787 707 ntBASIC17.8■□□□□ 0.44
USP39Q53GS9 AC136632.2-201ENST00000512891 861 ntBASIC17.8■□□□□ 0.44
USP39Q53GS9 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.8■□□□□ 0.44
USP39Q53GS9 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.8■□□□□ 0.44
USP39Q53GS9 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.8■□□□□ 0.44
USP39Q53GS9 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.8■□□□□ 0.44
USP39Q53GS9 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
USP39Q53GS9 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.8■□□□□ 0.44
USP39Q53GS9 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.8■□□□□ 0.44
USP39Q53GS9 AC073592.4-201ENST00000623827 446 ntBASIC17.8■□□□□ 0.44
USP39Q53GS9 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
USP39Q53GS9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.8■□□□□ 0.44
USP39Q53GS9 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP39Q53GS9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 GMCL1P1-201ENST00000463439 1581 ntBASIC17.79■□□□□ 0.44
USP39Q53GS9 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
USP39Q53GS9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.79■□□□□ 0.44
USP39Q53GS9 KRT18P27-201ENST00000427733 1299 ntBASIC17.79■□□□□ 0.44
USP39Q53GS9 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.79■□□□□ 0.44
USP39Q53GS9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms