Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDH1Q08174 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDH1Q08174 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDH1Q08174 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDH1Q08174 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDH1Q08174 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PCDH1Q08174 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 STK25P1-201ENST00000585406 838 ntBASIC16.91■□□□□ 0.3
PCDH1Q08174 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 AD001527.2-201ENST00000622994 785 ntBASIC16.91■□□□□ 0.3
PCDH1Q08174 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDH1Q08174 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH1Q08174 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 KRT18P1-202ENST00000452408 1331 ntBASIC16.91■□□□□ 0.3
PCDH1Q08174 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH1Q08174 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDH1Q08174 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDH1Q08174 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
PCDH1Q08174 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
PCDH1Q08174 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDH1Q08174 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 ATP5G2P1-201ENST00000433580 426 ntBASIC16.9■□□□□ 0.3
PCDH1Q08174 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
PCDH1Q08174 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDH1Q08174 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 AC109462.3-201ENST00000573934 613 ntBASIC16.9■□□□□ 0.3
PCDH1Q08174 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.9■□□□□ 0.3
PCDH1Q08174 Z69720.1-201ENST00000601483 472 ntBASIC16.9■□□□□ 0.3
PCDH1Q08174 AC091076.1-201ENST00000610741 619 ntBASIC16.9■□□□□ 0.3
PCDH1Q08174 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDH1Q08174 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH1Q08174 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDH1Q08174 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDH1Q08174 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH1Q08174 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
PCDH1Q08174 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PCDH1Q08174 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PCDH1Q08174 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PCDH1Q08174 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH1Q08174 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH1Q08174 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH1Q08174 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH1Q08174 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH1Q08174 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH1Q08174 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH1Q08174 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH1Q08174 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH1Q08174 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH1Q08174 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms